Cory Dobson, Author at Sanford Burnham Prebys - Page 11 of 41
Institute News

New study honors SBP scientist Marcia Dawson

AuthorSusan Gammon
Date

June 11, 2018

Professor Marcia Dawson was a fixture at Sanford Burnham Prebys for more than 25 years. The Stanford-educated biochemist was particularly interested in synthesizing compounds that induce apoptosis (programmed cell death) in tumors. Dawson passed away in 2016, but her work has continued.

Recently, researchers investigated several variations of a compound produced in the Dawson laboratory, called DIM-Ph-4-CF3. This molecule is designed to modulate a nuclear receptor protein called NR4A1. In this paper, published in the journal Oncotarget, the multi-lab team investigated whether oxidized versions of the compound could be even more potent against cancer.

“We tested a number of analogs, and I think the most interesting thing is that the oxidation products were more potent than their parent form,” said Marisa Sanchez, a PhD candidate in the lab of Dieter Wolf, PhD, and the first author on the paper. “This potency was exhibited by a significant decrease of cell viability in multiple cancer lines. They kill cancer very well.”

The NR4A1 receptor is usually found in the cell’s nucleus and cytoplasm. When modulated by the DIM-Ph-4-CF3 products, the cytoplasmic fraction appears to trigger the unfolded protein response, a cellular stress mechanism that often leads to apoptosis. The anti-cancer molecules showed particularly strong activity in prostate cancer and exhibited no obvious side effects.

As work continues on these molecules, they could potentially be used to augment the cancer-killing impact of chemotherapy or other treatments. Over time, cancer cells can evolve the ability to resist apoptosis, and this approach might work synergistically with existing therapies to overcome that resistance.

“They target those pathways in a different way to induce cell death,” says Sanchez. “It might be harder for cancers to develop resistance.”

Still, it’s quite early in the discovery process, and much more work needs to be done. Sanchez feels that further investigation could confirm the mechanism of action and perhaps make the molecule more specific.

In addition to being a rewarding effort to develop and test new anticancer molecules, this was a labor of love for the research team, several of whom had worked with Dawson for decades.

“We finished this in Marcia’s memory,” says Sanchez. “We really wanted to honor her.”

Institute News

Harnessing nanoparticles to fight drug-resistant infections

AuthorSusan Gammon
Date

June 7, 2018

The race against time to develop new antibiotics is more important than ever. A Wellcome Trust 2016 study predicted the present rate of emerging new virulent bacterial strains will outstrip the U.S. Food and Drug Administration approval rate for new antimicrobial agents by 2050—which means deaths from antimicrobial resistant strains will exceed deaths from cancer. Current studies show that in the United States, more than 23,000 deaths occur annually due to drug-resistant bacteria. Worldwide, the number is 700,000 deaths.

Erkii Ruoslahti, MD, PhD, distinguished professor at SBP, recently co-authored a study published in the journal Nature Communications that describes the first example of an effective gene therapeutic approach to fight lethal bacteria infections. The method uses a nanotherapeutic to deliver short interfering RNA (siRNA) that targets immune cells to bolster the immune system. The method was successfully used against a lethal bacterial infection of Staphylococcus aureus pneumonia in mice.

Until now, delivering siRNA-based therapeutics in the body has been difficult because of barriers built by both the body and by bacteria. These barriers have impeded the progress of gene therapeutic treatment of bacterial infections, including siRNA therapeutics.

To remedy this, the research team generated a porous nanoparticle host that protected siRNA payload from premature degradation in the blood stream. A peptide molecule engineered by Ruoslahti and Hong-Bo Pang, PhD at the University of Minnesota, was added to the surface of the nanoparticle that selectively attaches to immune cells called macrophages.

The researchers relied on the expertise of Ji-Ho Park, PhD, at the Korea Advanced Institute of Science and Technology (KAIST) to engineer a chemical coating, a fusogenic lipid, which allowed the nanoparticle to fuse with the cellular membrane and squirt the nanoparticle with its payload into the cell. The fusion mechanism also provided a means to induce dissolution of the silicon nanoparticles, releasing the siRNA therapeutic. This siRNA payload then reprogrammed the macrophage, activating it to engulf bacterial invaders.

The study was led by Michael Sailor, PhD, distinguished professor of chemistry and biochemistry at UC San Diego.

Institute News

“A Grand Canyon Aria” benefits SBP research

AuthorHelen Hwang
Date

June 4, 2018

A father’s love never dies, even when his child has succumbed to a fatal childhood disease. Alex Syed paid tribute to his daughter, Aria, by running a marathon through the majestic Grand Canyon in May 2018. Ten years ago, Aria passed away after suffering from congenital disorders of glycosylation, known as CDG—a disease that affects the way proteins and sugar molecules interact in the body.

In honor of his daughter, Syed raised more than $4,300 from 71 donors to fund important research in the laboratory of Hudson Freeze, PhD, professor and director of the Human Genetics Program at Sanford Burnham Prebys Medical Discovery Institute (SBP). Freeze is one of the world’s leading experts on CDG.

“Funding is always in short supply, so the donations that Alex raised in the name of Aria will bring us closer to finding a cure for other kids suffering from this devastating disease,” says Freeze. “Aria’s cells are in our lab to support experiments that will help build a database for possible therapies,” he adds.

To prepare for the run, which Syed dubbed “A Grand Canyon Aria,” he rose in the middle of the night to begin his 26-mile run from the South Rim via Bright Angel to North Rim, taking him over the mighty Colorado River.

Running through the Grand Canyon to raise money for Dr. Freeze’s research was Syed’s idea. He knows that rare genetic diseases do not receive a lot of funding from large pharma companies. “The almost-angelic work that Dr. Hud Freeze and his team are performing at SBP is truly unique,” says Syed.

To donate, go to sbpdiscovery.org/CDG.

Watch the video of Alex Syed’s run through the Grand Canyon in memory of Ari:

Watch the video from Dr. Hudson Freeze’s lab:

Institute News

Highlights from the 2018 Faculty Retreat

AuthorSusan Gammon
Date

June 4, 2018

SBP’s annual Faculty Retreat was held May 30–31 in beautiful Carlsbad, California.

This year’s theme was “Fundamental Cellular Processes in Health and Disease,” and featured 20 speakers from SBP areas of expertise:

·         Development and Aging — Malene Hansen, PhD, Lorenzo Puri, MD, PhD, Karen Ocorr, PhD, Alexey Terskikh, PhD, and Rolf Bodmer, PhD

·         Immunity and Inflammation Rob Weschler-Reya, PhD, Linda Bradley, PhD, Scott Peterson, PhD, and Jeff Smith, PhD

·         Technology Platforms — Dorit Hanein, PhD, Sumit Chanda, PhD, and Niels Volkmann, PhD

·         Drug and Disease Targets — Michael Jackson, PhD, Garth Powis, PhD, Wanda Reynolds, PhD, Elena Pasquale, PhD, and Matt Peroski, PhD

·         Share Resources Update — Craig Hauser, PhD

Special congratulations to Duc Dong, PhD, and Crystal Zhao, PhD, both of whom were officially promoted to associate professors.

Faculty promotion
Pictured (left to right): Duc Dong, PhD, Elena Pasquale, PhD and Crystal Zhao PhD

Dong, in the Human Genetics Program, is advancing research in cell/organ replacement therapy that may ultimately benefit patients with diabetes and Alagille syndrome—a genetic disorder that can affect the liver, heart and other parts of the body.

Zhao, in the Tumor Initiation and Maintenance Program, is studying the regulation of neural stem cells—research that may lead to therapies for neurological diseases, including Alzheimer’s disease, Parkinson’s disease, and mental health disorders that affect cognitive abilities.

A highlight of the annual retreat is the presentation of the “WOW” award, which stands for Wonderful Original Work. This year, the WOW was given to Robert Wechsler-Reya, PhD, who won for his presentation titled “Overcoming Immune Evasion in Pediatric Brain Tumors.”

Wechsler-Reya’s research goal is to advance immunotherapy for medulloblastoma tumors—the most common malignant brain tumor in children. By increasing certain cell surface molecules called MHC on these cancer cells, he believes he can improve the ability of T cells to recognize the tumors and kill them.

Wechsler-Reya is a professor in the Tumor Initiation and Maintenance Program at SBP and is also the program director for the Joseph Clayes III Research Center for Neuro-Oncology and Genomics at Rady Children’s Institute for Genomic Medicine.

Cosimo Commisso, PhD, and Crystal Zhao, PhD, served as faculty organizers.

And many thanks to Wendy Lyon and Nelson, the research administrative specialists who organized the event.

Institute News

A new approach to restore insulin production in diabetes

AuthorSusan Gammon
Date

May 23, 2018

If you have diabetes, there is a strong chance you are either on insulin therapy now, or will be in the future. This holds true for people with Type 1 and Type 2 diabetes; both types lead to elevated blood glucose levels.

Insulin therapy maintains blood glucose at healthy levels to prevent the complications that come with diabetes, such as vision problems, kidney disease, neuropathy, heart disease—and the list goes on.

Insulin is usually administered under the skin using a syringe, insulin pen or insulin pump. But scientists are working to change that.

Fred Levine, MD, PhD, a scientist at SBP, has been working on methods to restore pancreatic beta cells—the cells that live in pancreatic islets and store and secrete insulin.

In Type 1 diabetes—an autoimmune disease—beta cells are destroyed by the immune system. In Type 2 diabetes, beta cells gradually lose their ability to produce insulin. “Regenerating insulin-producing beta cells could potentially free millions of patients from daily doses of insulin,” says Levine.

Levine’s initial work, published in two papers in Stem Cells and Cell Death and Disease, began with an observation that injuring the pancreas of diabetic mice causes alpha cells to convert to convert to insulin-producing beta cells. Alpha cells are also located in pancreatic islets but don’t normally produce insulin.

“There was a signal coming from the injured pancreas driving the conversion of alpha cells to beta cells—a process known as transdifferentiation—and we wanted to know what that signal was,” says Levine.

Levine’s next study found that the activation of PAR2, a receptor on alpha cells, was driving the transition to insulin-producing beta cells. That research was published in a later paper Cell Death and Disease.

“This was a good step toward understanding how to restore beta cells, and there are good drug candidates that can activate PAR2, so it could work in humans,” says Levine. “But there was still hurdle. The transdifferentiation process only occurs in the setting of profound beta cell deficiency—there had to be practically zero functional beta cells for alpha cells to convert.”

Most people with Type 2 diabetes and a smaller percentage with Type 1 have some, but not enough, functional beta cells. For these patients, activating PAR2 alone wouldn’t be a sufficient to treat diabetes. Levine’s group hypothesized that there must be an inhibitory signal coming from beta cells preventing the process.

In the latest study, published in Islets, Levine’s research team found that insulin is the inhibitory signal that prevents transdifferentiation.

“It makes sense that insulin inhibits transdifferentiation, because why would your body generate beta cells if you already had a significant number of cells producing insulin,” says Levine. “But biology isn’t perfect, hence the need for insulin therapy.”

“We were able to work around these obstacles and generate insulin-producing beta cells by using a combination of drugs, one that activates PAR2 (2fLI), and two that inhibit insulin secretion and action (diazoxide and S961). It’s a two element process—one which is positively acting on alpha cells and the other repressive of beta cells,” explains Levine.

“Our research offers the prospect of a straightforward pharmacological approach to regenerate insulin-producing cells to treat diabetes,” says Levine. “For Type 2 diabetes, we could potentially drive transdifferentiation in vivo by activating PAR2 and inhibiting insulin for a short term. It could result in restoration of long-term beta cell function.

“For Type 1 diabetes, we would still need to address the autoimmune aspect of the disorder, because new beta cells would continue to be attacked by the immune system,” adds Levine. “But as our understanding and ability to rein in the autoimmune system improves, the approach could be a much needed breakthrough for the disease.”

Institute News

Highlights from the 2018 Graduate Program Retreat

AuthorSusan Gammon
Date

May 22, 2018

SBP’s Graduate School of Biomedical Sciences held its ninth annual retreat in San Marcos, Calif. on May 17-18.

This year’s theme was “Beyond the Bench: What is the future of your findings?” Students were encouraged to share their vision of where they think their research may ultimately lead. Students—25 in all—gave 20-minute presentations to explain their projects, show data and consider how their research may change the world.

“As a graduate student, sometimes we become laser focused on our individual projects, so it’s good to get that extra nudge to think beyond the experiments waiting on our lab bench, and how they may ultimately impact human health,” says Katja Birker, co-coordinator of the retreat and a second-year student in the lab of Rolf Bodmer, PhD, director of the Development, Aging and Regeneration Program.
 

Amir Razalm, SBP graduate student
Pictured above is Amir Razai, third-year SBP graduate student

The “Howling Coyote” award, given to the student with the best presentation, was won by Amir Razai, a third-year student in the lab of Guy Salvesen, PhD, professor in the Tumor Microenvironment and Cancer Metabolism Program, and Dean of the Graduate School. Scoring is based on quality, content and clarity, and is voted on by fellow students. Razai is working on the development of an antibody against matrix metalloprotease 10 (MMP10). MMP10 is associated with cancer and may have future potential as a therapeutic target.

Keynote speaker, William Mobley, MD, PhD, distinguished professor and associate dean for Neurosciences Initiatives in the Department of Neurosciences at UC San Diego, gave an in-depth look at the connection between Down syndrome and Alzheimer’s disease. Since nearly 100 percent of people with Down syndrome have Alzheimer’s disease by age 40, many biomedical researchers apply findings from Down syndrome research to Alzheimer’s disease research initiatives.

In addition to Salvesen, the Associate Dean of Admissions, Duc Dong, PhD, and the Associate Dean of Curriculum, Alessandra Sacco, PhD, were on hand for the entire retreat.

Special recognition and thanks go to the team that planned and supported the annual retreat: co-coordinator Joe Fromm, a second-year student in the lab of Nicholas Cosford, PhD, deputy director of SBP’s NCI-designated Cancer Center; Mary Bradley, manager of graduate school administration; Diane Klotz, PhD, director of the Office of Education, Training & International Services; Olga Gubanova, graduate program coordinator, and Andrew Bankston, PhD, program manager of the graduate school.

Institute News

SBP welcomes Congresswoman Susan Davis

AuthorSusan Gammon
Date

May 4, 2018

Susan Davis, U.S. Representative for California’s 53rd congressional district (D-San Diego), visited our Institute in April and met with several members of the faculty and SBP President Kristiina Vuori, MD, PhD  Davis, a strong advocate for increasing the NIH budget to advance scientific discoveries, has a long history of supporting initiatives on diabetes and cardiovascular health.

Davis was following up on an invitation for a tour of our campus from Chris Larson, PhD, vice president, drug discovery at SBP. Larson sits on the Board of Directors for the Southern California Chapter of the American Diabetes Association and meets regularly with Davis regarding issues related to diabetes care and research.

Pamela Itkin-Ansari, PhD, adjunct professor at SBP met with Davis and shared her research on implanting small encapsulation devices that contain pancreatic islet cells as an approach to treat type 1 (juvenile) diabetes. The work has now progressed to international clinical trials, which impressed Rep. Davis.

As a teenager, Davis worked as a counselor at a camp for diabetic children—most of whom have type 1 diabetes.  The experience led to a lifelong interest in improving the health and welfare of diabetic patients, both type 1 and type 2.

“Congresswoman Davis’ visit went really well,” says Larson, who organized a tour of the Prebys Center, showcasing the high-throughput drug discovery capabilities of the facility. “She was especially keen to learn how our automated technology can screen hundreds of thousands of chemical compounds to find future drugs.

“It was an honor to host Congresswoman Davis, and she and her staff are most welcome to visit anytime,” says Larson.

Institute News

Advocating for science

AuthorChristine Infante
Date

April 26, 2018

On April 24, Jennifer Zeitzer, director of legislative relations/deputy director, Office of Public Affairs at the Federation of American Societies for Experimental Biology (FASEB) spoke to Sanford Burnham Prebys Medical Discovery Institute scientists and nonscientists about the importance of getting involved as advocates for science.

“Advocacy is an important part of your role as a scientist,” she said. “It gives back to your professional community.”

Zeitzer went on to cite examples of how effective scientific advocacy has been in recent years. She credits the passing of the Omnibus Appropriations Bill (HR1625) that increased the NIH budget by $3 billion and the NSF budget by $295 million – the largest increases in 15 years – in part at least to advocacy. She also shared that FASEB rallied some 20,000 emails in a short timeframe to preserve tax benefits for graduate students.

A 10-year veteran of FASEB, Zeitzer summarized a few clear action steps that researchers can take to advocate for science: • Be prepared – understand what you want your congressional representative to do

• Do your homework – check congressional members’ websites and social media

• Stay in touch – contact your congress members, understand how they vote (www.congress.gov)

• Make your message effective – tell a personal story, talk about collaborators

Zeitzer encouraged the audience to participate in State Capitol Hill Day and to use the power of electronic media – from emails to social media. “If you don’t speak up, Federal funding will fall off the cliff again,” she said.

The seminar was hosted by SBP’s Office of Education, Training & International Services (OETIS).

To learn more about scientific advocacy or for an overview of online tools and resources go to FASEB’s Science Policy & Advocacy website or contact jzeitzer@faseb.org.

Institute News

2018 Bring It! fundraiser rocks it for research

AuthorSBP Staff
Date

April 24, 2018

Medical Discoveries and Beyond was the space-age theme of this year’s Bring It! fundraising event held on April 19th at the Del Mar Fairgrounds. More than 300 Sanford Burnham Prebys Medical Discovery Institute (SBP) supporters and guests donned Star Trek uniforms, Star Wars’ costumes, Conehead and cosmic Athena warrior outfits—all to raise money for biomedical research.

Co-chairs Juli Oh, Matt Browne, Sarah and David Szekeres were pleased that the event attracted so many people. “This event makes raising money fun and helps SBP reach a broad group of prospective supporters,” said Sarah.

In keeping with the cosmic theme, guests were served liquid nitrogen space popcorn, spuds in space and moon pies by waiters wearing lab coats.

SBP Board Chairman Hank Nordhoff enthusiastically welcomed “the next-generation of philanthropists” and reinforced SBP’s position as global leader in science. Nordhoff attended with his wife, Robin. Board member Alan Gleicher and his wife, Marleigh, also attended the event.

The uniquely SBP event had four rounds of space-themed trivia and six out-of-this-world stage challenges, including spooning Reese’s Pieces into an empty bowl without hands while wearing an E.T. headband; throwing cheese curls onto a team member’s shower-capped head covered in shaving cream; and launching space shuttle gliders into luminescent hula hoops.

There was also a raffle for an Honorary Padres for a Day package courtesy of SBP Board member and Padres co-owner Peter Seidler; a wine toss with exclusive wines donated by award-winning HALL Wines in Napa Valley; and the Fund-A-Need paddle raising.

Sponsors for the event included Alexandria Realty, Karen and Jeremy Anderson, BDO, CBRE, Cooley, Creative Fusion, Cushman & Wakefield, Danaher, Marleigh and Alan Gleicher, Jeanne Herberger, PhD, Heron Therapeutics, KPMG, Moon Valley Nurseries, Murfey Company, Josie and Jim Myers, Neurocrine Biosciences, NuVasive, Oxford Finance, San Diego Padres, Charles Patton, Pegasus Building Services, Reflow Medical, Retrophin, Square 1 Bank, Jonell and Gregory Tibbitts, Julie and Court Turner, Wells Fargo, and Willis Towers Watson.

John Weisbarth, host of Tiny House Nation, emceed the event for the second year in a row.

Institute News

How can prebiotics help your gut health?

AuthorAnjali Gupta
Date

April 16, 2018

Walk down the refrigerated section of any grocery store aisle and you’ll see shelves lined with yogurt containers screaming out the benefits of probiotics—the ‘good bacteria’ that help with digestion. Words like microbriome, gut health, and probiotics are now part of our common vocabulary. But, little has been mentioned about “prebiotics”!

In low concentrations in foods like onions, garlic, chicory root, and bananas—they usually reach the colon undigested. In the colon, prebiotics are broken down into smaller carbohydrates or “carbs” as we usually say. Probiotics eat these ‘carbs’ creating positive health effects—such as improved colon functions, reduced inflammation and protection from infections. In this way, prebiotics and probiotics work together to promote gastrointestinal health.

Scott Peterson PhD, professor at SBP, recently worked with UC San Diego and The Chopra Foundation to assess the prebiotic effects of three herbs (slippery elm, licorice and triphala) that are commonly used in Ayurvedic medicine—a system that has been practiced in India for over 5,000 years.

“Very few scientific and clinical studies have been done to test the effectiveness of these herbal medicines,” says Peterson. “We wanted to see how these herbs affect the growth and population of 300 species of bacteria commonly found in the gut.

Peterson’s team looked at fecal samples collected from 12 healthy middle-aged men and women who ate a vegetarian or vegan diet. The team wanted to know how the bacterial populations in the gut change when exposed to the medicinal herbs.

“We were surprised at the extent and complexity of the changes in the gut microbiota composition,” says Peterson. “And the species most positively impacted by the herbal supplements were predominantly species with documented health-promoting qualities.

“This study, published in the Journal of Alternative and Complementary Medicine, highlights the significant prebiotic potential of herbal medicines and suggests that the health benefits of these herbs are due, at least in part, to their ability to modulate the gut microbiota in manner linked to improved gastrointestinal health,” explains Peterson.

“You can’t patent an herb. But there is an opportunity to combine prebiotics and herbs into potential medicines. If we can use natural therapy to reduce inflammation for example, then it may change the effectiveness of certain drugs used to treat obesity, type 2 diabetes or inflammatory bowel disease (IBD).”

Considering that about 65 million Americans suffer from disorders of the gut, novel evidence-based medicines may offer new options for relief. The researchers are already planning to test these herbs in a controlled human clinical trial.