CIRM Program
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Overview and Goals
Sanford Burnham Prebys hosts a unique educational program to train Ph.D. candidates, postdoctoral scientists, and clinical fellows in cutting-edge translational stem cell biology and regenerative medicine. Importantly, stem cell biology broadly includes regenerative medicine, gene or cell therapy, molecular medicine, developmental biology, tissue engineering, oncogenesis, degeneration, aging, disease modeling, genome editing, drug discovery, bioinformatics, and artificial intelligence. We embrace CIRM’s (the California Institute for Regenerative Medicine’s) overall mission which is to improve human health and well-being through the broader principles of developmental and stem cell biology.
The goal of the program is to educate highly-skilled, rigorous stem cell and regenerative medicine scientists and clinicians, who will expand the pool of researchers not only in California but worldwide, working towards the development of novel therapies for a broad range of diseases.
Sanford Burnham Prebys is committed to promoting diversity and strongly encourages applications to this CIRM Training Program from Ph.D. students from backgrounds historically underrepresented in biomedical research.
Leadership
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Pier Lorenzo Puri MD
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Alessandra Sacco PhD
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Evan Snyder MD PhD
Full BioCIRM Fellows
Postdoctoral fellows
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Chiara Nicoletti
Postdoctoral fellow
Puri Lab
Sanford Burnham Prebys
Project title
Epigenetic reprogramming of muscle stem cells by extracellular vesicles
as therapeutic approach in Duchenne Muscular Dystrophy
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Rouven Arnold
Postdoctoral fellow
Adams Lab
Sanford Burnham Prebys
Project title
Uncovering protective mechanisms of stem cell aging: A new role for histone chaperone HIRA
Graduate students
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Caitlin Lange
Graduate student
Kumsta Lab
Sanford Burnham Prebys
Project title
Autophagy and Germline Stem Cell Signaling in the Regulation of Neuronal Proteostasis
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Ceda Stamenkovic
Graduate student
Sacco Lab
Sanford Burnham Prebys
Project title
Mapping Cellular Senescence within Regenerating Skeletal Muscle
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Daniel Rebibo
Graduate student
Deshpande and Yip Lab
Sanford Burnham Prebys
Project title
Identifying and Characterizing Novel Leukemia Stem Cell-Associated Micropeptides
Lab skills/techniques
Ribosome-profiling analysis, RNA-seq, ChIP-Seq
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Gabriele Guarnaccia
Graduate student
Sacco Lab
Sanford Burnham Prebys
Project title
Serum Amyloid A1 protein (SAA1) impairs myogenesis and myotube size in Pancreatic Cancer Cachexia
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Katya Marchetti
Graduate student
Ocorr Lab
Sanford Burnham Prebys
Project title
Identifying Molecular Mechanisms Underlying HLHS – The Roles of ETS Family Proteins
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Marcos Garcia Teneche
Graduate student
Adams Lab
Sanford Burnham Prebys
Project title
Role of aging in leukemia stem cell capacity
Lab skills/techniques
In vivo CRISPR, mouse models of cancer and aging
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Monica Nicolau
Graduate student
Puri Lab
Sanford Burnham Prebys
Project title
Understating the regenerative potential of muscle stem cells (MuSCs) in dysferlinopathy
Lab skills/techniques
Bulk, single cell, single nuclei RNA-seq, ChIP-seq analysis, cell line culture, molecular biology (RNA and protein-based), muscle dissection from in vivo murine models
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Nahal Azimi
Graduate student
Deshpande Lab
Sanford Burnham Prebys
Project title
Multimodal Investigation of Prognostic “Stemness” Attributes in AML
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Ruslan Nuryyev
Graduate student
Snyder Lab
Sanford Burnham Prebys
Project title
Characterizing penumbral rescue following perinatal hypoxic-ischemic brain injury
Lab skills/techniques
Sterile stem cell and primary tissue culturing, various stem cell differentiation protocols, RT-qPCR, Western blot, single cell RNA-seq sample prep., cryosectioning, fluorescence microscopy, rodent microsurgery, animal behavior
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Savio Chow
Graduate student
Yip Lab
Sanford Burnham Prebys
Project title
Uncovering dosage and temporal effects of drug and gene combinatorial perturbations through single-cell multi-omics integration in leukemic stem cells
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Sophie Hao
Graduate student
Dong Lab
Sanford Burnham Prebys
Project title
The Extrahepatic Duct as a Novel Source of Liver Stem Cells
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Win Ning Chen
Graduate student
Huang Lab
Sanford Burnham Prebys
Project title
Deciphering TREM2 Dysfunction On Tau Pathology In Alzheimer’s Disease (AD)
Lab skills/techniques
Cellular transfection, biochemistry, stem cell biology, molecular cloning and biology, in vivo model (mouse models), xenotransplantation, in vitro mode
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Yu-Ling Linda Chang
Graduate student
Colas Lab
Sanford Burnham Prebys
Project title
Investigation of the role of JUNB- interactants during cell fate reprogramming
Postdoctoral fellow
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Mohammad Abdul Auwal
Postdoctoral fellow
Zaya’s Lab
San Diego State University
Project title
BRN3/POU4 homologs are required for mechanosensory neuron regeneration in planarians
Graduate students
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Luisjesus Santiago Cruz
Graduate student
House Lab
San Diego State University
Project title
Role of macrophages in the development of ovarian cancer stem-like cells
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Mallory Cathell Palatucci
Graduate student
Zaya’s Lab
San Diego State University
Project title
SoxB1-mediated chromatin remodeling in stem-cell-based tissue regeneration
Postdoctoral fellows
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David McBride
Postdoc
Schultz Lab and Johnson Lab
Scripps Research
Project title
Development of a long-acting, local injectable formulation of a mesenchymal stem cell differentiating agent to promote regeneration in osteoarthritis
Lab skills/techniques
Drug delivery formulation, immunology, high-throughput screening, bioinformatics
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Delphine Leclerc
Postdoc
Miller Lab
Scripps Research
Project title
Development of potent and safe CRISPR tools for in vivo gene editing using
Lab skills/techniques
CRISPR-Cas9, base editing, prime editing, synthetic biology, directed evolution, building bacterial selection circuits, high throughput sequencing
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Fang Zhou
Postdoc
Schultz Lab
Scripps Research
Project title
Selective delivery of DYRK1A inhibitors for β-cell regeneration
Lab skills/techniques
Peptide and small-molecule synthesis, purification and characterization by HPLC, mass spectroscopy and NMR, protein expression and purification, antibody drug conjugates and peptide drug conjugates synthesis, purification and characterization, biochemical and cell-based assays
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Liping Liu
Postdoc
Schultz Lab
Scripps Research
Project title
Human Retinal pigment epithelial(hRPE) cells expansion for Retinal Repair in age-related macular degeneration (AMD)
Lab skills/techniques
Target-based and cell-based high-throughput screening, cell biology skills, immunofluorescence, molecular biology techniques
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Zhilin Wang
Postdoc
Jin Lab
Scripps Research
Project title
Single cell in vivo perturb seq study tissue aging
Lab skills/techniques
In vivo perturb seq, Immunofluorescence and confocal analysis, CRISPR screening library construction
Graduate students
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Ariana Sulpizio
Graduate student
Lairson Lab
Scripps Research
Project title
Targeting oligodendrocyte progenitor cells for the treatment of multiple sclerosis
Lab skills/techniques
Drug discovery, chemical biology, remyelination
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Corey Switzler
Graduate student
Lairson Lab
Scripps Research
Project title
Modulating Extrinsic Factors of OPC Remyelination Using Small Molecules
Lab skills/techniques
Stem cell isolation, culture, and differentiation, in vivo animal studies, chemical biology techniques
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Justice Fleischmann
Graduate student
Young Lab
Scripps Research
Project title
Investigating a novel trispecific T cell engaging antibody for enhanced anti-tumor responses
Lab skills/techniques
Transgenic murine models, cell engineering, co-culture assays, flow cytometry, CRISPR, protein engineering, primary cell isolation from whole blood, tissue culture, bio-layer interferometry, lentivirus production, ELISA, PCR, molecular cloning, gel electrophoresis, western blot, confocal microscopy
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Kayla Nutsch
Graduate student
Bollong Lab
Scripps Research
Project title
Small Molecule Inhibitors of YAP for Oncology
Lab skills/techniques
Cell culture, cellular and biochemical assay development, high-throughput screening, protein purification, immunoprecipitation, click-chemistry, qPCR, molecular modeling in drug discovery
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Maya Bulos
Graduate student
Bollong Lab
Scripps Research
Project title
Identifying New Pharmacological Mechanisms for Targeting the Hippo Pathway
Lab skills/techniques
Cell culture, western blotting, immunoprecipitation, protein purification, fluorescence microscopy, qPCR
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Michael Bula
Graduate student
Lipton
Scripps Research
Project title
Investigating role of Microglia in 3D cerebral organoid cultures
Lab skills/techniques
Maintenance, differentiation, and quality control of iPSC/hESC lines, immunostaining, DNA extraction, RNA extraction, DNA cloning, qRT-PCR/PCR, western blotting, southern blotting, ELISA, molecular cloning, luciferase reporter assays, transfection
Clinical fellows
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Harrison M. Penrose, MD, PhD
Gastroenterology Clinical fellow
Boland-Ghosh Lab
UC San Diego
Project title
Stem-cell Based Models of Inflammatory Bowe Disease as Platforms for Drug Discovery
Lab skills/techniques
Gastroenterology, GPCR, CRISPR-Cas9, immunology, transcriptomics
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Mrinal Joshirao, MD
Pediatric Hematology Oncology Clinical fellow
Jamieson Lab
UC San Diego
Project title
Role of APOBEC3 and ADAR1 in pediatric leukemia
Lab skills/techniques
Mammalian cell culture, cDNA prep, qPCR and RNA extraction, transfection, nucleofection and viral transduction, immunohistochemistry, flow cytometry and cell sorting, CD34 selection
Postdoctoral fellows
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Marina Cruz
Postdoctoral fellow
Signer Lab
UC San Diego
Project title
The Role of Protein Aggregation in Hematopoietic Stem Cell Fitness and Aging
Lab skills/techniques
Flow cytometry, FACS, immunofluorescence, cell-based assays, western blot, qPCR
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Georgia Chaldaiopoulou
Postdoctoral fellow
Muotri Lab
UC San Diego
Project title
Mechanisms and therapeutic approaches for SETD5 syndrome
Lab skills/techniques
Cloning, cell culture, Immunofluorescence staining, RNA & DNA, Multi-color Flow cytometry, proteins, microscopy, mouse work
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Nirvay Sah
Postdoctoral fellow
Soncin Lab
UC San Diego
Project title
Power of the Placenta: Investigating the role of creatine kinase in placental development, bioenergetics, and function
Lab skills/techniques
Stem cell culture, Immunohistochemistry, CRISPR-Cas9, Assays for cellular metabolism (using Seahorse XF flux analyzer), enzyme activity, cell proliferation and apoptosis, qPCR
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Raffaella Lucciola, PhD
Postdoctoral fellow
Gage Lab
Salk Institute
Project title
Epigenetic Entropy and Drivers of Neuronal Identity Loss in Alzheimer’s Disease
Lab skills/techniques
Our lab is at the interface between Stem Cell Biology and Neuroscience; Molecular Biology, Genomics, Sequencing Technology, Cell Reprogramming Technology
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Silvia Vicenzi
Postdoctoral fellow
Crews Lab
UC San Diego
Project title
Wnt pathway receptors as novel biomarkers for the identification and characterization of multiple myeloma cancer stem-like cells
Lab skills/techniques
Cellular and molecular biology, in vitro assays, in vivo techniques in zebrafish and mouse animal models, fluorescence live imaging and flow cytometry, optogenetics
Graduate students
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Alma Renero
Graduate student
Manor Lab
UC San Diego
Project title
Partial reprogramming enhanced rescue of inner ear cochlear hair cell function
Lab skills/techniques
Cell culture, microscopy, animal surgeries
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Celeste Kanne
Graduate student
Zarrinpar Lab
UC San Diego
Project title
Genetically engineered E. coli to modulate intestinal stem cell
Lab skills/techniques
Molecular biology, microbiology, synthetic biology
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Hammza Khaliq
Graduate student
Mali Lab
UC San Diego
Project title
Engineering In Vivo Vascularized Tissues Via Molecular Sculpting Engineering In Vivo Vascularized Tissues Via Molecular Sculpting
Lab skills/techniques
MicroRNA engineering, pancreatic organs, molecular sculpting, RNAseq
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Lucia Zhou Yang
Graduate student
Mertens Lab
UC San Diego
Project title
Alzheimer patient-based 3D iN-glia constructs to study age-dependent pathological and resilience mechanisms.
Lab skills/techniques
2D and 3D in vitro disease modeling, human cell reprogramming-based technologies, high resolution imaging
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Tianyao Xu
Graduate student
Goren Lab & Benner Lab
UC San Diego
Project title
Systematic interrogation of the PcG interactome in hiPSCs and derived NPCs
Lab skills/techniques
Molecular biology technology development
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Rachael McVicar
Graduate student
Snyder Lab
Sanford Burnham Prebys
Project title
Stem cell derived lung models, organoids, neonatal lung development and health, innate antiviral defense in the airway
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Tony Ngo
Postdoc
Chun Lab
Sanford Burnham Prebys
Project title
Novel RNA discovery with therapeutic potential revealed using from human neurodegenerative disease iPSCs
CIRM Calendar
Providing Opportunities
How CIRM is Building a Legacy of Next Gen Scientists
Ofreciendo Oportunidades
Cómo CIRM Está Creando un Legado de Científicos de la Próxima Generación
Questions and concerns
Submit your anonymous CIRM fellowship related questions and concerns here.