ebola Archives - Sanford Burnham Prebys
Institute News

Ebola expert weighs in on news of a potential cure

AuthorMonica May
Date

August 13, 2019

Scientists recently reported that two treatments saved the lives of people infected with the Ebola virus—with the New York Times reporting that roughly 90% of newly infected patients were saved—suggesting we are ever so close to a cure. 

To place this news in context, we caught up with Ebola expert Sumit Chanda, PhD, whose team at Sanford Burnham Prebys is working to find a pill-based treatment for the deadly virus.

Tell us a bit more about Ebola and the recent outbreaks. 
Ebola is a virus responsible for severe, often fatal, hemorrhagic fevers in humans—meaning it damages blood vessels and can cause internal bleeding, among other symptoms. The mortality rate varies between 50% and 90%. The 2014 to 2016 West Africa epidemic has been of unprecedented scope, with more than 28,000 reported cases and more than 11,000 deaths. Exported cases were also documented in the U.S. and Europe. Since August 2018, a new outbreak is ongoing in the Democratic Republic of the Congo, with more than 2,800 total cases reported and more than 1,800 deaths. So far, no medication can treat people already sickened by Ebola (an experimental vaccine has shown effectiveness).

Describe the study and key findings for us. 
Last November, several potential treatments were evaluated in clinical trials in the outbreak area. Two of these treatments, mAb114 (Ridgeback Biotherapeutics) and REGN-EB3 (Regeneron Pharmaceuticals), were found to be highly effective in reducing Ebola-related deaths. These drugs are monoclonal antibodies, which are protein-based therapies—the same kind that are currently being used to treat cancers, autoimmune and other diseases. 

What is your reaction? Is this big news? Or is more research needed?
This is a very important result. For the first time, a clinical therapy significantly reduced mortality after Ebola exposure—especially when given early after infection. While it cannot be called a “cure,” since not everyone taking the therapy survived, it represents a hugely important advance by the scientific community and brings hope to people exposed to this virus and in the outbreak regions. 

What does this advance mean for people infected with the Ebola virus?
People impacted by Ebola have so far been skeptical about medical treatment, especially considering the low success rate of previous treatments. We expect that the high survival rate associated with these two treatments will encourage infected individuals to go to Ebola treatment centers. This will increase the number of people receiving the treatments, reducing the total amount of deaths and helping contain the spread of the virus.

What does this news mean for the quest to find an Ebola treatment?
This remarkable achievement gives me hope that a cure is possible, potentially by combining these therapies with additional drugs. There is more work to be done, however. These antibody-based treatments require administration by a medical professional in a specialized Ebola treatment center and can be expensive. An Ebola therapy that comes in the form of a low-cost pill—the focus of my lab’s work—will be easier to deploy to patients, especially in areas that do not have access to advanced facilities. Since it appears that early treatment is important, easy availability to a medicine will benefit rural patients who are usually at the epicenter of an outbreak—and will help prevent an epidemic from taking root in the first place. 

Anything else you’d like to add? 
We are now, more than ever, hugely optimistic that efforts to develop an Ebola antiviral drug, especially one that is low cost and can be easily distributed in affected regions, will be part of a complete cure regimen for Ebola.

Sumit Chanda, PhD, is the professor and director of the Immunity and Pathogenesis Program at Sanford Burnham Prebys. His team works to find new treatments for infectious diseases, including influenza A (flu), human immunodeficiency virus (HIV) and Ebola virus, by unraveling the cellular machinery that allows these viruses to thrive.

Institute News

Battling infectious diseases with 3D structures

AuthorSusan Gammon, PhD
Date

April 25, 2017

Sanford Burnham Prebys Medical Discovery Institute (SBP) scientists are part of an international team led by Northwestern University Feinberg School of Medicine that has determined the 3D atomic structure of more than 1,000 proteins that are potential drug and vaccine targets to combat some of the world’s most dangerous emerging and re-emerging infectious diseases.

These experimentally determined structures have been deposited into the World-Wide Protein Data Bank, an archive supported by the National Institutes of Health (NIH), and are freely available to the scientific community. The 3D structures help expedite drug and vaccine research and advance the understanding of pathogens and organisms causing infectious disease.

“Almost 50 percent of the structures that we have deposited in the Protein Data Bank are proteins that were requested by scientific investigators from around the world,” said Feinberg’s Wayne Anderson, PhD, director of the project. “The NIH has also requested us to work on proteins for potential drug targets or vaccine candidates for many diseases, such as the Ebola virus, the Zika virus and antibiotic-resistant bacteria. We have determined several key structures from these priority organisms and published the results in high-impact journals such as Nature and Cell.

Teamwork with an international consortium

This milestone effort, funded by two five-year contracts from the National Institute of Allergy and Infectious Diseases (NIAID), totaling a budget of $57.7 million, represents a decade of work by the Center for Structural Genomics of Infectious Diseases (CSGID) at Feinberg, led by Anderson in partnership with these institutions:

  • University of Chicago
  • University of Virginia School of Medicine
  • University of Calgary
  • University of Toronto
  • Washington University School of Medicine in St. Louis
  • UT Southwestern Medical Center
  • J. Craig Venter Institute
  • Sanford Burnham Prebys Medical Discovery Institute
  • University College London

How the 3D structures are made

Before work begins on a targeted protein, a board appointed by the NIH examines each request. Once approved, the protein must be cloned, expressed and crystallized, and then X-ray diffraction data is collected at the Advanced Photon Source at Argonne National Laboratory. This data defines the location of each of the hundreds or even thousands of atoms to generate 3-D models of the structures that can be analyzed with graphics software. Each institution in the Center has an area of expertise it contributes to the project, working in parallel on many requests at once.

The bioinformatics group SBP, led by Adam Godzik, PhD, focuses on steps that have to be taken before the experimental work starts. Every protein suggested by the research community as a target for experimental structure determination is analyzed and an optimal procedure for its experimental determination is mapped out.

Experimental structure determination used to have a very high failure rate and the money and time spent on failed attempts is a major contributor to the total expense and time needed to solve protein structures. Both can be significantly improved using “Big Data” approaches, as researchers learn from thousands of successful and failed experiments in structural biology. The SBP bioinformatics group uses these approaches to improve success rates at CSGID, allowing our center to solve more structures at lower costs.

Until recently the process of determining the 3D structure of a protein took many months or even years to complete, but advances in technology, such as the Advanced Photon Source, and upgrades to computational hardware and software has dramatically accelerated the process. The Seattle Structural Genomics Center for Infectious Disease, a similar center funded by NIAID, is also on track to complete 1,000 3-D protein structures soon. Browse all of the structures deposited by the CSGID.

Anyone in the scientific community interested in requesting the determination of structures of proteins from pathogens in the NIAID Category A-C priority lists or organisms causing emerging and re-emerging infectious diseases, can submit requests to the Center’s web portal. As part of the services offered to the scientific community, the CSGID can also provide expression clones and purified proteins, free of charge.

This project has been supported by federal funds from the NIAID, NIH,  Department of Health and Human Services, under contract numbers HHSN272200700058C and HHSN272201200026C.