Tim Huang Archives - Sanford Burnham Prebys
Institute News

Investigating individual immune responses to COVID-19 vaccination and infection

AuthorGreg Calhoun
Date

March 3, 2025

New study analyzes how the set of proteins in blood plasma changes following vaccination and infection, and may contribute to improving vaccine development

While many people have received similar mRNA vaccinations to protect against COVID-19, the strength and duration of the resulting immunity varies. It remains unclear exactly what causes individuals’ immune systems to react differently to the COVID-19 vaccine and other immunizations.

To get a better understanding of this phenomenon, scientists at Sanford Burnham Prebys, Seer Inc. and Federal University of Rio Grande do Sul examined the type and amount of virtually all proteins in the blood plasma of 12 volunteers as they received two doses of the Pfizer-BioNTech mRNA COVID-19 vaccine. The research team published the results of this pilot study in the Journal of Proteome Research on February 4, 2025, detailing the first attempt to comprehensively explore how an mRNA vaccine changes the mix and concentration levels of proteins known as the proteome.

The scientists were able to study a set of more than 3,000 proteins, within which they found a set of proteins that changed following each dose of vaccine. The authors also found a set of proteins that could distinguish between research participants who had or had not tested positive for COVID-19 in the months after receiving the second dose of vaccine.

While more research is needed with larger groups of research volunteers, this pilot study suggests that studying proteome changes can increase our understanding of how individuals’ immune systems react differently to immunization. Future findings from additional experiments may reveal methods for developing more effective vaccines.

Svetlana Maurya, PhD

Svetlana Maurya, PhD, is director of the Sanford Burnham Prebys Proteomics Shared Resource.

Lucélia Santi, PhD, professor adjunto at the Federal University of Rio Grande do Sul, is the senior and corresponding author on the study.

Ting Huang, PhD, a scientist at Seer Inc. focused on data science and machine learning, is first author on the manuscript.

Additional authors include:

  • Alex Rosa Campos, Ramón Díaz and Svetlana Maurya, from Sanford Burnham Prebys
  • Jian Wang, Alexey Stukalov, Khatereh Motamedchaboki, Daniel Hornburg and Serafim Batzoglou, from Seer Inc.
  • Laura R. Saciloto-de-Oliveira, Camila Innocente-Alves, Yohana P. Calegari-Alves and Walter O. Beys-da-Silva, from Federal University of Rio Grande do Sul
Institute News

New insights into Alzheimer’s disease

AuthorMonica May
Date

September 25, 2020

Sanford Burnham Prebys scientist publishes two papers that bring us one step closer to understanding—and potentially treating—the devastating condition.

For millions of families and caregivers around the world, the need for an effective treatment for Alzheimer’s disease remains urgent despite the ongoing pandemic. Now, two studies from Timothy Huang, PhD, who was recently promoted to assistant professor in the Degenerative Diseases Program at Sanford Burnham Prebys, bring us one step closer to understanding the root cause of the disease.

Brain protein may help protect against Alzheimer’s disease  

Previous research from Huang and his colleagues showed that a neuronal protein called SORLA helps reduce production of toxic amyloid beta protein that accumulates and leads to Alzheimer’s disease. Given this important role, Huang decided to dig deeper to understand SORLA’s “job” inside the brain.

In a paper featured on the cover of The Journal of Neuroscience, Huang and his team analyzed mice that produce high levels of SORLA and studied the effects of enhancing SORLA on the brain. This work showed that higher levels of SORLA resulted in elongated neurites, structures that extend from neurons, and improved the repair and regeneration of axons—the cable-like fibers that neurons use to communicate. These findings suggest that drugs that increase levels of SORLA might help protect the brain against Alzheimer’s disease and may even help people with a spinal cord injury. 

Huang describes the findings as “the tip of the iceberg” and is eager to learn more about this important protein—with the ultimate goal of identifying potential targets for drugs that could slow the progression of Alzheimer’s disease. 

A new model for studying Alzheimer’s disease 

Many of the mutations associated with Alzheimer’s disease are found in a brain cell type called microglia. However, unlike other cells, mouse microglia are very different from human microglia. Because scientists primarily use mouse models to understand disease, this difference limits their ability to understand how microglial mutations lead to Alzheimer’s disease.  

To overcome this hurdle, Huang and his team took on the formidable task of creating human stem cell lines that contain Alzheimer’s mutations found in human microglia. The scientists then tracked the downstream effects of these mutations in the cells, including epigenetic and gene expression changes, which revealed many new, previously unknown relationships between Alzheimer’s-associated genes. The findings were published in the Journal of Experimental Medicine

More studies are needed to fully understand the how these interactions alter the course of Alzheimer’s disease—which can now be answered using this new model. Huang, who describes the work as “one of the most challenging and ambitious projects I’ve worked on so far” believes the cell line may also be used to help screen for potential Alzheimer’s disease drugs.