toxicity Archives - Sanford Burnham Prebys
Institute News

Randal Kaufman included in $12 million initiative to improve hemophilia treatment

AuthorMiles Martin
Date

March 8, 2022

The new project will help researchers better understanding why current gene therapy treatments aren’t working.

A multi-institute research collaboration including Sanford Burnham Prebys has just received a $12 million grant from the National Heart, Lung, and Blood Institute to improve hemophilia therapy. The award will fund three projects that could lead to safer and potentially curative treatments for the disorder. One of these projects will be led by Randal J. Kaufman, PhD, who directs the Degenerative Diseases Program at Sanford Burnham Prebys.

How viruses could be help treat hemophilia
Hemophilia is an X-linked genetic condition that prevents the blood from clotting properly. It occurs in about one out of 5,000 male births. In patients with severe forms of the disease, internal or external bleeding can be life threatening. Standard treatments for severe hemophilia involve intravenously replacing the clotting proteins that patients are unable to produce adequately on their own. However, a gene therapy approach uses viruses as a delivery mechanism to provide the body with the information it needs to start making its own clotting factors.

“Several companies have taken this forward into clinical trials, and in some of these trials, the patients initially looked like they were cured,” says principal investigator Roland W. Herzog, PhD, the Riley Children’s Foundation Professor of Immunology at Indiana University School of Medicine. “But what they all have in common is that they need to deliver a lot of the virus in order to get the desired results, and over time, clotting factor levels started to decline. So it’s clear that we need to further study the biology of this phenomenon.”

How this grant will help improve the process
In hemophilia A, which accounts for about 80% of all cases, patients do not produce enough of a clotting protein called factor VIII (FVIII). To better understand the mechanisms that are mitigating the effects of current drug candidates, Herzog is teaming up with some of the nation’s leading experts. 

Their program will focus on three major projects in gene therapy for hemophilia A:

  • Project 1 will focus on cellular toxicity and stress that can be induced by FVIII protein production. This project is led by Kaufman. 
  • Project 2 will focus on molecular virology and the development of viral vectors used in gene therapy to deliver the FVIII-encoding gene.This project is led by Indiana University School of Medicine professor of pediatrics Weidong Xiao, PhD
  • Project 3 will examine the immune system and its role in the interference of FVIII production over time. It is jointly led by Herzog and Ype P. de Jong, MD, PhD, assistant professor of medicine at Cornell University. 

Together, they hope to provide new insight that can lead to lower levels of toxicity and improved longevity of FVIII production in patients who are treated with gene therapy for hemophilia.

“This is an incredibly significant and urgent medical question, and it requires the synergy of multiple groups with different expertise to come together and solve a problem that they wouldn’t be able to solve on their own,” says Herzog. “My hope is that our studies will help the field as a whole move toward curing hemophilia A.”

The grant is titled “Toward Safer Gene Therapy for Hemophilia A” (P01HL160472). This post was adapted from a press release published by Indiana University School of Medicine.

Institute News

Measuring heart toxicity of cancer drugs in a dish

AuthorJessica Moore
Date

February 22, 2017

A class of cancer drugs known as tyrosine kinase inhibitors (TKIs) are often damaging to the heart, sometimes to the degree that they can’t be used in patients. These toxic effects are not always predictable using current preclinical methods, so they may not be discovered until they make it to clinical trials.

New research could make it possible to tell which TKIs cause heart toxicity without putting any humans at risk. The collaborative study, involving Wesley McKeithan, a PhD student in the Sanford Burnham Prebys Medical Discovery Institute (SBP) graduate program and Mark Mercola, PhD, adjunct professor at SBP and a professor at Stanford University, used lab-grown heart muscle cells to assess the drugs’ potential to cause damaging effects.

“This new method of screening for cardiotoxicity should help pharma companies focus their efforts on TKIs that will be safe,” says Mercola, who collaborated with Joseph Wu, MD, PhD, also a professor at Stanford, on the study published in Science Translational Medicine. “That could mean better new TKIs will make it to the market, since we will be able to predict whether or not they cause heart problems early in the development process.”

TKIs with tolerable cardiac side effects, which include imatinib (Gleevec) and erlotinib (Tarceva), are widely used to treat multiple types of cancer. Because tumors often become resistant to these drugs, new compounds in this class continue to be developed to provide replacement treatments. Other TKIs can harm the heart in a variety of ways, from altering electrical patterns to causing arrhythmias, reducing pumping capacity, or even increasing risk of heart attacks.

Mercola and Wu’s team used heart muscle cells derived from induced pluripotent stem cells (iPSCs), which can be generated from adult skin or blood cells. After treating heart muscle cells with one of 21 TKIs, they assessed their survival, electrical activity, contractions (beating) and communication with adjacent cells. They used a new method for measuring heart cell contraction developed by the lab of Juan Carlos del Álamo, Ph.D., at UC San Diego to create a ‘cardiac safety index’, which correlates in vitro assay results with the drugs’ serum concentrations in humans. Importantly, the safety index values matched nicely with clinical reports on the cardiotoxicity of currently used TKIs.

The study also identified a possible way to protect heart muscle cells from impairment caused by TKIs—treating them with insulin or insulin-like growth factor. Although more research is needed, the findings suggest that it may be possible to alleviate some of the heart damage in patients receiving these chemotherapies.

Mercola adds, “By using cells derived from a broader group of individuals, this screening strategy could easily be adopted by the pharma industry to predict cardiotoxicity.”

This story is based in part on a press release from Stanford University School of Medicine.

Institute News

How cholesterol-lowering drugs ameliorate fatty liver disease

AuthorJessica Moore
Date

October 27, 2016

Nonalcoholic fatty liver disease (NAFLD) is quietly becoming an epidemic alongside obesity—up to 20% of people in Western countries have it. Though NAFLD, the mildest of a spectrum of liver diseases characterized by excess fat in liver cells, has no symptoms at first, it increases risk for liver cancer and can worsen to nonalcoholic steatohepatitis (NASH) or even liver failure.

There are no specific treatments for NAFLD, but cholesterol-lowering drugs called statins appear to slow its progression to more serious liver inflammation and fibrosis/scarring, characteristics of NASH. However, they haven’t been widely adopted, in part because of concerns about statins’ potential liver toxicity, though recent analyses suggest that severe toxicity is rare.

Now, a study co-led by Timothy Osborne, PhD, professor and director of the Integrative Metabolism Program, and published in Scientific Reports, outlines the molecular pathway through which statins break down fat stores in the liver.

“We show directly that these drugs reduce the amount of fat molecules and cholesterol in the liver in an animal model of NAFLD,” said Osborne. “Our results provide support for using statins to treat NAFLD itself, even if patients’ serum cholesterol isn’t dangerously high.”

The experiments were initiated by Young-Kyo Seo, PhD, now a professor at the Ulsan National Institute of Science and Technology, while he was a postdoc in Osborne’s laboratory. The study was based on previous work that found statins activate a protein called SREBP-2, a transcription factor that activates genes to regulate cholesterol balance.

To figure out how statins work on liver cells, the team searched SREBP-2’s target genes for enzymes that break down fat molecules and found PNPLA8, which splits certain fat molecules into pieces that regulate cell signaling. Further experiments showed that PNPLA8 helps liver cells break down stored fat molecules.

The new study provides some hints as to PNPLA8’s mechanism. Statins are known to enhance a cellular recycling process called autophagy, which breaks down cell parts—such as lipid droplets, the site of fat storage—for energy and re-use. The new results suggest that this may depend on PNPLA8’s ability to target the autophagy machinery directly to lipid droplets.

“This is the first time PNPLA8 has been implicated in freeing fat from liver cells,” Osborne commented. “Looking in more detail at how it mobilizes fat stores will give us an idea of whether it might be a good drug target.”

Institute News

New drug combination may lead to treatment for childhood brain cancer

AuthorJessica Moore
Date

March 14, 2016

Researchers at SBP have identified a new combination therapy for the most aggressive form of medulloblastoma, a fast growing type of pediatric brain cancer. The study, published  in Cancer Cell, is expected to lead to a clinical trial to confirm the benefits of the novel drug combination. Continue reading “New drug combination may lead to treatment for childhood brain cancer”

Institute News

SBP seeks renewed funding for Florida Translational Research Program to ensure breakthrough discoveries continue

Authorjmoore
Date

February 18, 2016

The Florida Translational Research Program (FTRP), an early drug discovery initiative funded by the state of Florida, has proven crucial in advancing research and securing out-of-state funding for investigators at SBP and collaborating institutions. During the current legislative session, SBP is seeking renewed funding of the three-year program after a budget hiatus in 2015 put numerous investigations on hold. Continue reading “SBP seeks renewed funding for Florida Translational Research Program to ensure breakthrough discoveries continue”

Institute News

HIV and METH: An unpredictable storm

Authorsgammon
Date

January 6, 2016

 

Research has shown that methamphetamine (METH) use among HIV-positive individuals may be as high as 25%, compared with a national average of less than one percent. On its own, METH can cause irreparable physical, psychological, and social damage to individuals who abuse or become dependent on the drug. For HIV-positive patients, particularly individuals undergoing treatment with antivirals, the combined effects of METH and HIV infection on the central nervous system are particularly concerning.

A new study by SBP researchers evaluates the neuronal damage caused by HIV proteins, METH, and combinations of antiretroviral drugs (ARVs). Combinations of ARVs are the most common treatment for HIV-positive individuals, and are credited for increasing the survival of patients to near normal life spans. The results, published in Antimicrobial Agents and Chemotherapy, are surprising.

  • The overall positive effect of ARVs—keeping patients alive—comes with a downside. Certain ARV drug combinations are neurotoxic.
  • Some combinations of HIV, ARVs and METH increase neuronal impairment, while others have no additive effect. And the results are unpredictable.

“Our finding that ARVs can be neurotoxic is concerning,” said Marcus Kaul, PhD, associate professor in the Immunity and Pathogenesis Program at SBP. “We already know the virus on its own can cause a condition called HAND, which stands for HIV-associated neurocognitive disorders. That’s a fancy way of describing changes in memory, concentration, attention, and motor skills that affect up to 50% of HIV-positive patients.”

“Since the goal is to keep HIV-positive patients alive and healthy, it’s important to learn if the treatments we use to prolong life have unwanted side effects. Our research suggests that some ARV combination therapies aggravate neurocognitive decline. ”

Adding methamphetamine to the mix further complicates matters.

“We found that even though METH on its own is toxic to neurons, with some combinations of ARVs, we observe increased neuronal impairment, but in other combinations there is no additive affect. This means that the neurocognitive effects of METH may depend on the ARV combination prescribed to the patient.”

The study tested four of the most commonly used ARTs in the presence and absence of METH and gp120, a neurotoxic HIV protein that sits on the surface of the virus but can also be released from infected cells. The researchers used an in vitro system to assess neuronal damage produced by various combinations of the drugs and virus protein. Damage was measured by assessing the number of neurons and quantifying components of their processes and synapses. The analysis also included measurement of neuronal ATP levels—the main energy source of cells. Measuring ATP levels is a well-established method for evaluating toxicity. A reduction in ATP levels is indicative of cell damage.

“In a perfect world we would be able to predict which ARV therapy combinations are best suited to HIV-positive individuals prone to recreational drug use. While we are probably a few years from this degree of personalizing HIV treatment, in the short term the information adds to our understanding of the pathways and mechanisms that lead to neurocognitive decline and dementia, so the lessons we learn may ultimately be applied more broadly to neurological disorders,” Kaul added.

 

Institute News

Existing compound holds promise for reducing Huntington’s disease progression

Authorsgammon
Date

December 7, 2015

Currently, there is no treatment to halt the progression of Huntington’s disease (HD), a fatal genetic disorder that slowly robs sufferers of their physical and mental abilities. In a new collaboration between SBP’s Conrad Prebys Center for Chemical Genomics (Prebys Center) and the University of California, San Diego School of Medicine, researchers have discovered that an existing compound, previously tested in humans for diabetes, offers hope for slowing HD and its symptoms. Continue reading “Existing compound holds promise for reducing Huntington’s disease progression”

Institute News

Scientists identify promising new melanoma drug

Authorsgammon
Date

November 25, 2015

A new drug discovered by scientists at Sanford Burnham Prebys Medical Discovery Institute (SBP) may show promise for treating skin cancers that are resistant or unresponsive to today’s leading therapies.

In the United States, 5 million people are treated annually for skin cancer, and 9,000 people die from the deadliest form—melanoma—according to the US Department of Health and Human Services.

The new compound, named SBI-756, targets a specific molecular machine known as the translation initiation complex. These structures are in every cell and play the critical role of translating mRNA into proteins. In cancer cells the complex is impaired, producing extra protein and providing a growth advantage to tumors. SBI-756 causes the translation complex to dissociate, and was shown to inhibit melanoma cell growth in the study, published today in Cancer Research.

“The unique target of SBI-756 makes it especially promising for use in combination therapy,” said Ze’ev Ronai, senior author and scientific director of SBP’s La Jolla campus. “A major issue limiting the effectiveness of current melanoma therapies is that tumors become resistant to treatment. Combining drugs that come at a melanoma from different angles may help overcome the problem of drug resistance.”

About 50% of melanomas are caused by mutations in a specific gene called BRAF. Patients with these tumors are commonly prescribed vemurafenib, a BRAF inhibitor that shrinks tumors. However, many patients experience a relapse within weeks, months, or even years because tumors evolve and become resistant to the drug. A similar phenomenon is seen in mice, where treatment of BRAF melanomas results in an initial response, but 3-4 weeks later the tumors return.

The team found that if SBI-756 is co-administered with vemurafenib, the tumors disappeared and most importantly, they did not reoccur. Even in mice with advanced/late stage BRAF driven cancer, the reappearance of . These data suggests that SBI-756 provides a significant advantage in overcoming tumor resistance.

“The ability of this compound to delay or eliminate the formation of resistant melanomas is very exciting,” said Ronai.

In other forms of melanoma, caused by mutations in the genes NRAS and NF1—which are known as unresponsive to BRAF drugs—administering SBI-756 alone significantly the scientists found. The team is now testing whether combining SBI-756 with existing drugs used for treating these types of melanomas can make the tumors disappear.

Drugs that target the translation initiation complex have been intensely pursued in the past few years, not just for melanoma, but for a wide array of cancers. SBI-756 is considered a first-in-class drug because it is the first successful attempt to target a specific part of the complex called eIF4G1.

In fact, SBI-756 is the culmination of seven years of work in Ronai’s group—testing and tweaking the drug’s features to help it bind to the target more readily and to make it easier to formulate. The resulting compound is a significant improvement over the initial version.

“It appears that the dose we need to administer is very low. Even in the experiments where the drug was administered to mice with tumors over a significant period of time, we have not found any toxicity,” Ronai said.

“The finding of SBI-756 is also exciting for the possible treatment of diseases other than cancer, such as neurodegenerative diseases, where the activity of the translation initiation complex is reported to be higher,” said professor Nahum Sonenberg of McGill University, a world renowned leader in the field of protein translation.

“We hope that we’re going to come up with the next generation of the compound that can go into clinical trials—first in melanoma but likely in other tumors,” Ronai said.

The study was performed in collaboration with the Conrad Prebys Center for Chemical Genomics at SBP, Lady Davis Institute for Medical Research, Sir Mortimer B. Davis-Jewish General Hospital, McGill University (Canada), the National Cancer Institute, MD Anderson Cancer Center, and Yale University.

Institute News

Study explains control of cell metabolism in patient response to breast cancer drugs

Authorsgammon
Date

March 9, 2015

A new research study has discovered a mechanism that explains why some breast cancer tumors respond to specific chemotherapies and others do not. The findings highlight the level of glutamine, an essential nutrient for cancer development, as a determinant of breast cancer response to select anticancer therapies, and identify a marker associated with glutamine uptake, for potential prognosis and stratification of breast cancer therapy. The study results were published online in Cancer Cell. Continue reading “Study explains control of cell metabolism in patient response to breast cancer drugs”

Institute News

New compound shows promise for safe, effective treatment of heart attack and stroke

AuthorGuest Blogger
Date

February 17, 2015

Heart attack and ischemic stroke affect hundreds of thousands of Americans every year and are leading causes of death in the United States. Both of these conditions are caused by blood clots that block vessels and interrupt blood flow to the heart or the brain, respectively. Antiplatelet therapies such as aspirin prevent clotting by decreasing the activity of blood cells called platelets, thereby lowering the risk of dying from a heart attack or having a stroke. But these drugs can cause serious side effects, such as gastrointestinal toxicity, abnormally low blood cell counts, and bleeding. Therefore, there is a strong need for research aimed at better understanding the molecular mechanisms leading to platelet activation in order to develop improved therapies.

Continue reading “New compound shows promise for safe, effective treatment of heart attack and stroke”