Uncategorized Archives - Page 7 of 57 - Sanford Burnham Prebys
Institute News

Ani Deshpande promoted to professor in the Cancer Genome and Epigenetics Program at Sanford Burnham Prebys

AuthorGreg Calhoun
Date

July 16, 2025

The newly promoted scientist will continue studying how blood cancers sabotage stem cells’ special features to grow and spread

As of July 1, 2025, Ani Deshpande, PhD, was promoted to professor in the Cancer Genome and Epigenetics Program at Sanford Burnham Prebys.

The Deshpande lab studies developmental processes in stem cells that get hijacked by cancer, focusing specifically on acute myeloid leukemia (AML), one of the most common types of blood cancer. Several attributes of normal stem cells, including the ability to self-renew, are known to be co-opted or reactivated by cancer cells.

In addition, Deshpande collaborates within and beyond the institute on several large categories of AML research, including studying the genetics of AML, studying how the disease works in animal models and working to develop drugs that can target specific mutations associated with the disease, which are numerous.

“AML has many different subtypes, so it’s been difficult for researchers to make major advances to treat all cases of AML,” said Deshpande. “Most patients with AML are given the same treatments that have been used since the 1970s, which is why we want to look at AML from as many angles as possible.”

Deshpande joined the institute in 2015 and was promoted to associate professor in 2022. Prior to arriving at Sanford Burnham Prebys, he held positions at Memorial Sloan Kettering Cancer Center and Harvard Medical School. Recently, Deshpande and colleague Pamela Itkin-Ansari, PhD, launched The Discovery Dialogues Podcast, which explores  groundbreaking discoveries in science and medicine.

“I’m deeply grateful for the incredible support of my trainees, mentors and colleagues,” said Deshpande. “And for all who made this scientific journey so meaningful and worthwhile.”

Institute News

Q & A with Postdoctoral Researcher Ranajit Das, PhD, from the Cosford Lab

AuthorCommunications
Date

July 15, 2025

Meet one of our early-career scientists at Sanford Burnham Prebys: Ranajit Das, PhD, a postdoctoral researcher in the lab of Nicholas Cosford, PhD. Das is a medicinal chemist focused on designing and synthesizing new potential therapies, with a focus on cancer treatment.

When and how did you become interested in science?
During my early childhood education, I developed a deep curiosity about the world around me. Over time, I became more interested in chemistry. I found it fascinating that two colorless things can mix and make something colorful, or that two liquids can merge and produce a solid.

Then, when I was introduced to organic chemistry in my undergraduate years, it was eye-opening. I realized that organic chemistry is connected to nearly everything we use or do in our everyday lives. Everything from the blue dye in denim jeans to fading vegetable colors, fragrances, and even the medicines we take, are made of organic molecules. That realization drew me even deeper into the subject.

As I continued studying organic chemistry, I got into synthetic organic chemistry and building molecules. If you have the right knowledge, you can use simple building blocks that are usually made of carbon, hydrogen, nitrogen, and oxygen, and assemble them into compounds that can be functional, beautiful and even lifesaving.

How has your scientific career evolved?
While earning my master’s degree, I was learning about drug discovery and how organic molecules can be useful for treating human diseases. Then, during my PhD, I trained in how to use those chemical components to build a probe to study a disease and ascertain how to potentially cure that disease.

Ever since, I have wanted to build something which will improve human health. That is the reason I decided to pursue a scientific career.

What brought you to the Cosford lab at Sanford Burnham Prebys?
I chose to pursue my postdoctoral training at Sanford Burnham Prebys because of its strong emphasis on drug discovery. The Cosford lab has been working for almost two decades on a wide range of disease models—including cancer, central nervous system and infectious diseases—which are key areas in today’s therapeutic landscape.

This provides an unusual opportunity to gain practical experience with diverse targets. Furthermore, several of the lab’s drug candidates are in preclinical or phase I/II clinical trials, reflecting its strength in translational research.

What are the key areas of research you focus on?
Apoptosis, or programmed cell death, is a natural process in our body. It allows us to remove unwanted cells as we grow and develop. Cancer, however, can disrupt the system of apoptosis.

One way this happens is through the action of inhibitor of apoptosis proteins, which block caspases and help regulate cell survival and cell death during cancer. The second mitochondrial activator of caspases, or SMAC, can bind to and neutralize these inhibitor of apoptosis proteins, thereby promoting apoptosis.

We’re trying to make molecules that can mimic SMAC in order to treat cancer.

What motivates you about your research?
It’s the creativity and complexity around creating 3D chemical architecture to have potential medicinal properties. As we test and refine the compounds, I enjoy using my knowledge of how they react with protein molecules and how that affects the activity of those proteins, which can be useful for targeting diseases.

It is essential to nurture a feedback loop of biological activity and synthesis that keeps the drug discovery process dynamic and purposeful. For me, it is motivating to see that we are designing something and synthesizing something that is having the biological activity necessary for any potential candidate therapy. From there, we can work on finetuning in terms of potency, selectivity, pharmacodynamic stability and other characteristics of successful treatments.

What do you like about working here?
I like the collaborative and supportive research environment here at the institute. We have scientists and students from many different backgrounds and areas of expertise all focused on the same goal, the advancement of biomedical research.

The core research facilities and interdisciplinary expertise make this place ideal for pursuing very complicated targets for translational research. The Institute also has an emphasis on mentorship and career development, which is very important. I feel I’m growing as a scientist in a community which values curiosity, integrity and teamwork.

How would you describe the culture here?
There is a culture of open communication. Sharing ideas, discussing challenges and seeking feedback are encouraged. I’ve found this helps foster personal and professional growth, as well as scientific innovation.

What do you enjoy doing when you’re not in the lab?
I have a deep appreciation for world cinema, particularly Hollywood classics from the 80s and 90s. Bengali literature holds a special place in my heart, as does Indian classical music—especially the rich, melodic tones of the sitar and sarod.

Postdocs at Sanford Burnham Prebys are pushing the boundaries of science every day through curiosity, collaboration, and innovation. This series highlights their unique journeys, what inspires their work, and the impact they’re making across our labs.

Explore the Full Series

Institute News

Science in Pictures

AuthorScott LaFee
Date

July 14, 2025

A confocal micrograph of blood vessel networks in the intestine of an adult mouse.

Image courtesy of Satu Paavonsalo and Sinem Karaman, University of Helsinki.

Institute News

Q & A with Postdoctoral Researcher Sara Ancel, PhD, from the Wang Lab

AuthorCommunications
Date

July 8, 2025

Shaping the future of science at Sanford Burnham Prebys: Sara Ancel, PhD, a postdoctoral researcher in the lab of Will Wang, PhD, who draws on a background in engineering and stem cell biology to explore tissue remodeling and disease mechanisms through cutting-edge spatial omics approaches. Originally from Switzerland, she brings together cutting-edge technology and collaborative science to push boundaries—and inspire the next generation of researchers.

How did you first become interested in science—and what brought you to Sanford Burnham Prebys? 
I didn’t grow up around science, my parents weren’t in the field, so I didn’t really get exposed to it until high school. But I’ve always been curious, especially about things I didn’t understand. That curiosity led me to study engineering, which gave me the flexibility to explore many scientific fields before focusing on one.

During my master’s studies in Switzerland, I had the opportunity to spend time at Stanford University working in Dr. Helen Blau’s lab. That’s where I met Will Wang, who would later become a principal investigator at Sanford Burnham Prebys. When I was finishing my PhD in Switzerland, he was just starting his lab here. The timing was perfect—and I became his first postdoc.
Shape

What drew you to Will Wang’s research?
What really stood out to me was the new technology he was developing—an imaging method that lets us look at many biological markers at once. Coming from an engineering background, that kind of innovation was really exciting. I saw a chance to combine everything I’d been learning, for example, stem cell biology, muscle research, and engineering, into one meaningful project.

Plus, joining a brand-new lab was a unique opportunity. I was involved in everything from setting up experiments and training newcomers to handling operations. It was a fast-paced, all-hands-on-deck experience that taught me so much, both scientifically and personally.
Shape

What are you working on now? How would you explain it to someone outside of science?
My main project focuses on a process called glycosylation, which is how cells add sugar molecules to proteins and fats. These sugar tags might sound simple, but they play a big role in how cells function, and how things go wrong in disease.

I had no background in glycobiology when I started, but I was able to bring in new technologies and combine them with biology to explore this process in a completely new way. I’ve also been fortunate to collaborate with the Freeze Lab here at Sanford Burnham Prebys, which has been incredibly valuable.

What makes Sanford Burnham Prebys a unique place to work?
I’ve been so impressed by how collaborative this institute is. It’s a small enough community that people know each other, so reaching out for help or advice is easy. I’ve been able to train on equipment here and at nearby institutions like UC San Diego, and I’ve had the chance to connect with researchers across many fields.

One of the most exciting aspects has been working with clinicians and getting access to real patient samples. That kind of experience really deepens the impact of our research and gives me a broader view of how basic science can connect to human health.

What was one of the biggest challenges you faced when you arrived?
Moving from Switzerland to San Diego was a huge adjustment. I arrived and quickly within about a week, I was in a new culture, new lab, and new scientific environment. I was also the only person in the lab at first, which made things more intense.

But I had great support from international services and from the community of researchers here. That support helped me adapt, and it motivated me to dive in and help get the lab up and running.

What do you hope to do next in your career?
I’ve developed a wide range of skills here, not just technical, but also communication and collaboration. I’d love to build on that by moving into work that’s more closely connected to patients. Collaborating with clinicians and working with patient samples has been incredibly meaningful, and I’d like to pursue more translational or clinical science in the future.

What do you enjoy doing when you’re not in the lab?
Since moving to San Diego, I’ve gotten into climbing and bouldering, it’s something I picked up with friends from neighboring labs. I also love hiking and visiting national parks. Coming from Switzerland, I’m used to mountains, but the parks here in the U.S. are spectacular. I’ve started a list and want to see as many as I can!

What advice would you give to young scientists?
Stay curious. Don’t be intimidated by what you don’t know—see it as an opportunity to grow. Science can be frustrating when things don’t work out, but that’s part of the process. If you accept the ups and downs and keep learning, it can be incredibly rewarding.

Do you have any publications or projects in the works?
Yes! I’m finishing a methods-focused paper on the technology I’ve been developing, and we’ve filed a patent on it thanks to support from the Institute’s intellectual property team. I’m also co-authoring a review article with a researcher from Stanford on drug discovery for muscle aging. It’s been a great opportunity to step back and reflect on everything happening in the field.

Postdocs at Sanford Burnham Prebys are pushing the boundaries of science every day through curiosity, collaboration, and innovation. This series highlights their unique journeys, what inspires their work, and the impact they’re making across our labs.

Explore the Full Series

Institute News

Science in Pictures

AuthorScott LaFee
Date

July 7, 2025

A fluorescent micrograph of a section of small intestine of a mouse. The finger-like projections are villi, which line the intestinal tract and increase surface area for absorption.

Image courtesy of Amy Engevik, Medical University of South Carolina.

Institute News

Science in Pictures

AuthorScott LaFee
Date

June 30, 2025

An optical projection tomograph depicts the lung of a 16 ½ day old embryonic mouse, with airways highlighted in pink and epithelial progenitors in green.

Image courtesy of Kamryn Gerner-Mauro and Jichao Chen at University of Texas MD Anderson Cancer Center.

Institute News

Science in Pictures

AuthorScott LaFee
Date

June 23, 2025

A trichinella cyst is depicted in pork muscle. Trichinella is a parasitic worm known to cause trichinosis, an intestinal infection that, untreated, can progress to serious inflammation of the heart and lungs.

Image courtesy of Nathan P. Myhrvold, Modernist Cuisine.

Institute News

Opinion: Health database could provide key insights to improve care

AuthorDavid A. Brenner
Date

June 23, 2025

In every body and in everybody, there is an enormous, diverse and changing array of medical and health information, from longitudinal data like our weight and blood pressure over the years to the biological samples, such as blood and tissues, that your doctor or a medical professional may ask you to provide.

There is also the non-medical social and demographic information that we share, from lifestyle choices like smoking, drinking and how much we exercise to socioeconomic status and how often we actually seek or need health care.

To some degree, we provide this information to our doctors during visits to clinics and hospitals. It’s part of how they work to keep each of us as healthy as possible.

But for everyone else, not so much, which is a shame.

The amount of health information collected by physicians is vast, unprecedented and exponentially growing, fueled by now-standard electronic health records (EHR) that make it easier, simpler and faster to collect and share patient information.

That last word “share” is critical. While having a digital record of your health is useful and convenient for individual doctors and patients, it is the untapped power and potential of new insights and discoveries lying within our combined health data that promises improved biomedical research and better answers to our relentless need for new drugs, treatments and therapies.

The term “translational medicine,” whose intent is to specifically apply basic scientific discoveries to human health, was introduced in the 1990s and gained widespread use through the emergence of popular terms like “bench-to-bedside” and “precision medicine” in the early 2000s.

But there is a massive gap between the generation of clinical data with its hidden treasures and the reality of companies and institutions leveraging those insights into new drugs and treatments that actually help people.

I know because I stand in that gap, a member of the scientific infrastructure necessary to translate research into health. I’m not alone, but it can sometimes feel like a lonely crusade.

Thanks to the biomedical revolution fueled by new technologies, we now have much deeper, empirically based understanding of how life works, from molecules and cells to networks of tissues and organs. Correspondingly, we better understand the pathology of disease, albeit not perfectly. There is still much to learn.

Where we always struggle is translating basic knowledge into action, into healthier and saved lives.

Humans are 99.9% identical in their genetic makeup. It is the remaining 0.1% that makes each of us unique. These genomic differences include “variances of uncertain significance.” or VUS. They are slight differences in DNA. Unlike gene variations specifically associated with disease, such as cystic fibrosis and sickle cell anemia, it is not clear whether variances of uncertain significances are actually connected to a specific health condition.

They are riddles wrapped in a mystery inside a cell membrane. We don’t know what variances of uncertain significances do, if they do anything, but within them perhaps lie many of the answers and remedies for what ails us.

Everyday clinics and hospitals collect human cells and tissue samples for examination. If a sample reveals a known, recognizable condition or disease, it can inform the physician about next treatment steps. If it does not, it is likely stored and ignored.

Doctors lack the expertise and capacity to study variances of uncertain significances in detail. Current and future biotechnology companies might have the expertise and ability to test and market new remedies, but they need someone to first to figure out how biology translates to medicine.

Some places, like where I work, already do this. It’s part of our vision and mission. The translational journey requires taking real steps. Systematically tapping the troves of clinical samples for new knowledge is one of them.

Another approach is to introduce the variances of uncertain significance into a preclinical model of a disease and see whether it makes the phenotype (the disease characteristics) worse. If the disease gets worse in the model system, the variances of uncertain significance is probably a disease causing mutation, if the disease is unchanged, the variances of uncertain significance is probably a harmless genetic variant.

Biomedical repositories and basic researchers can be doing more, collaborating more. The benefits are both certain and significant.

View the original piece in the San Diego Union-Tribune

Institute News

LEAP scholars share research and celebrate a year of growth

AuthorCommunications
Date

June 16, 2025

Last week, scholars in the LEAP (Lab Experience As Pathway) program shared their research at a capstone presentation event, marking the culmination of a year-long journey in the lab. Designed to bridge the gap between college graduation and graduate school, the LEAP program provides recent grads with hands-on research experience, professional development, and mentorship to prepare them for advanced studies in STEM.

The program was first launched by Dr. Ani Deshpande and has since been championed by Dr. Kevin Yip, who continues to lead and shape its success. With generous support from the Prebys Foundation, the LEAP program is led by the Sanford Burnham Prebys NCI-designated Cancer Center, with significant contributions from the Office of Education, Training and International Services (OETIS), Workforce Engagement and Belonging (WEB), a dedicated team of mentors, and many other Sanford Burnham Prebys colleagues.

In his closing remarks, Dr. Deshpande reflected on the purpose and promise of the program. “This is about you,” he told the scholars. “Your energy, your growth, your potential. I’ve been so impressed by your scientific curiosity and your confidence.”

Dr. Yip added, “It’s been a privilege to work with such a talented and motivated group. Watching them grow as scientists and individuals over the past year has been truly inspiring.”

As the event wrapped up, students headed to a poster session and photo session with plenty to celebrate: a year of lab experience, new skills, and a clearer path to graduate school and beyond.

The LEAP program students include:
Emerald Adeyan (Chavez and Heynen-Genel Labs)
Developing an Innovative Assay for High-Throughput Detection of ecDNA in MYC-Amplified Medulloblastoma
Kyle Alvarez (Jackson and Sinha Labs)
Tissue Morphology Predicts Telomere Shortening in Human Tissues​
Monica Jensen (Huang Lab)
Development and Validation of TREM2 Overexpression Lines in H9 Embryonic Stem Cells
Rachel Khoury  (Wang Lab)
Motor Neuron Rewiring in Aging & Cachectic Muscle Wasting Conditions​
Kai Rauda (Osterman Lab)
Skin-Deep Discovery: A Novel Vitamin C Metabolic Pathway in Cutibacterium acnes​
Sarina Safavi (Yip Lab)
Exploring Differential Expression in Alzheimer’s Disease Resilience​
Isabel Sakowicz (Kumsta and Tharp Labs)
Glucose-Driven Fibrotic Pathways: Connecting Metabolic Stress to Ovarian Fibrosis​
Mahek Shah (Spruck Lab)
Validating F5446 as an Inducer of Viral Mimicry in Human Breast Cancer Cells​

Institute News

Science in Pictures

AuthorScott LaFee
Date

June 16, 2025

A micrograph using confocal, fluorescence and image stacking technologies depicts the optic nerve head of a rodent. Astrocytes in yellow, contractile proteins in red and vasculature in green.

Image courtesy of Hassanin Qambari and Jayden Dickson, Lions Eye Institute, Australia.