Cancer Molecular Therapeutics Program Archives - Sanford Burnham Prebys
Institute News

Curebound awards two grants to Sanford Burnham Prebys scientists

AuthorGreg Calhoun
Date

February 12, 2025

The San Diego-based philanthropic organization has awarded $43 million in cancer research to date

Curebound recently announced the awarding of 17 grants in December 2024 for a total of $8.25 million in funding to advance cancer research in 2024.

Two new grants will support cancer research conducted by scientists at Sanford Burnham Prebys. Since 2014, 32 Curebound grants have supported projects that included scientists at the institute.

A workaround for a tricky target

The TP53 gene contains the blueprint for constructing a protein called tumor protein p53. This protein is considered a tumor suppressor because it helps cells grow in a controlled manner.

When cell growth goes awry, however, the TP53 gene is a common culprit as the most frequently mutated gene in cancers. While this ubiquity has placed a bullseye on the mutated tumor protein p53 for aspiring drug developers, it has proven tricky to target directly.

Brooke Emerling, PhD, director of the Cancer Metabolism and Microenvironment Program, and her collaborators have shown that the growth of cancer cells with a mutated TP53 gene is dependent on lipid enzymes called phosphatidylinositol-5-phosphate 4-kinases (PI5P4K). Emerling and her collaborators have identified compounds that break down these enzymes.

The researchers have demonstrated the ability of these compounds to target and eliminate cancer cells with a mutated TP53 gene without harming normal cells. Curebound will support the team’s ongoing efforts to work around the difficult-to-target tumor protein p53 by instead targeting PI5P4K.

Next, the group plans to optimize the compounds that break down PI5P4K to develop cancer drugs that are strong candidates for future clinical trials.

Curebound collaborators: Patrick Kearney, PhD, director of Medicinal Chemistry in the Conrad Prebys Center for Chemical Genomics, and Eric Wang, PhD, assistant professor in the Cancer Molecular Therapeutics Program.

Boosting the immune system against lung cancer

The immune system is one of the main defenses of the human body to fend off harmful pathogens and invasive cells such as cancer. Among all white blood cells, a particular cell type, called a T cell, can directly kill cancer cells and therefore plays an essential role in building anti-tumor immune responses.

Immunotherapies that boost the anti-cancer capabilities of T cells have revolutionized the way we treat cancer, especially in blood cancers such as leukemia, lymphoma and myeloma. More recently, immunotherapies are rapidly advancing to become mainstream treatments for solid cancers as well.

Currently, however, less than a third of patients with lung cancer benefit from immunotherapies. Pandurangan Vijayanand, MD, PhD, the William K. Bowes Distinguished Professor at the La Jolla Institute for Immunology, discovered that certain T cells called cytotoxic T lymphocytes have molecular features associated with a robust immune response against lung cancer tumors. His work has identified new targets for lung cancer immunotherapy.

Curebound will support Vijayanand’s collaboration with Michael Jackson, PhD, senior vice president for Drug Discovery and Development in the Conrad Prebys Center for Chemical Genomics, to use this research to identify agents to boost tumor immune responses.

The research team’s work has the potential to identify a new class of immunotherapy drugs for patients with lung cancer.

Curebound collaborator: Changlu Liu, PhD, director of Receptor Pharmacology in the Conrad Prebys Center for Chemical Genomics.

Pandurangan Vijayanand

Pandurangan Vijayanand, MD, PhD, is the William K. Bowes Distinguished Professor at the La Jolla Institute for Immunology.

Institute News

How cancer cells change as they metastasize

AuthorScott LaFee
Date

December 9, 2024

Most cancer deaths are caused by metastasis, but how cancer cells and tumors modify themselves and spread from their origins to other parts of the body remains largely a mystery — and fundamentally challenging.

In a new paper published December 6, 2024 in Science Advances, study co-author Sanju Sinha, PhD, assistant professor in the Cancer Molecular Therapeutics Program at Sanford Burnham Prebys, and colleagues, investigate whether primary and metastatic tumors more closely resemble the tissues of origin or target tissues in terms of gene expression.

Their findings suggest movement and evolution, providing a comprehensive transcriptome-wide view of the processes through which cancer tumors adapt to their metastatic environments before and after metastasis.

Institute News

The Cancer Letter covers collaboration between Sanford Burnham Prebys and the National Cancer Institute to precisely prescribe cancer drugs

AuthorGreg Calhoun
Date

May 14, 2024

The May 10 issue of The Cancer Letter details a recent publication explaining the investigation of a new AI tool that may be able to match cancer drugs more precisely to patients.

The Cancer Letter—a news organization and weekly publication based in Washington, D.C., that focuses on cancer research and clinical care—included an article in its May 10 issue about a partnership between scientists at Sanford Burnham Prebys and the National Cancer Institute (NCI).

Authored by Sanju Sinha, PhD, assistant professor in the Cancer Molecular Therapeutics Program at Sanford Burnham Prebys, and the NCI’s Eytan Ruppin, MD, PhD, the “Trials & Tribulations” feature describes a first-of-its-kind computational tool to systematically predict patient response to cancer drugs at single-cell resolution. The study regarding this new tool was published on April 18, 2024, in the journal  Nature Cancer.

The Cancer Letter was founded in 1973 and focuses its coverage on the development of cancer therapies, drug regulation, legislation, cancer research funding, health care finance and public health.

Institute News

NIH director highlights Sanford Burnham Prebys and National Cancer Institute project to improve precision oncology

AuthorGreg Calhoun
Date

May 9, 2024

The NIH director’s blog features a recent publication detailing the study of a new AI tool that may be able to match cancer drugs more precisely to patients.

Monica M. Bertagnolli, MD, director of the National Institutes of Health (NIH), highlighted a collaboration between scientists at Sanford Burnham Prebys and the National Cancer Institute (NCI) on the NIH director’s blog. Bertagnoli noted advances that have been made in precision oncology approaches using a growing array of tests to uncover molecular or genetic profiles of tumors that can help guide treatments. She also recognizes that much more research is needed to realize the full potential of precision oncology.

The spotlighted Nature Cancer study demonstrates the potential to better predict how patients will respond to cancer drugs by using a new AI tool to analyze the sequences of the RNA within each cell of a tumor sample. Current precision oncology methods take an average of the DNA and RNA in all the cells in a tumor sample, which the research team hypothesized could hide certain subpopulations of cells—known as clones—that are more resistant to specific drugs.  

Bertagnoli said, “Interestingly, their research shows that having just one clone in a tumor that is resistant to a particular drug is enough to thwart a response to that drug. As a result, the clone with the worst response in a tumor will best explain a person’s overall treatment response.” 

More of Bertagnoli’s thoughts on this collaboration between scientists at Sanford Burnham Prebys and the NCI are available on the NIH director’s blog

Sanju Sinha, PhD, assistant professor in the Cancer Molecular Therapeutics Program at Sanford Burnham Prebys, is the first author on the featured study.