Hudson Freeze Archives - Page 3 of 4 - Sanford Burnham Prebys
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Diagnosing a rare disease in children

AuthorSusan Gammon
Date

February 6, 2018

Children born with the rare genetic disorder known as CDG often live for years before they receive a diagnosis.  CDG—which stands for congenital disorders of glycosylation—can cause serious, sometimes fatal, malfunction of different organs and systems in the body, including the nervous system, muscles and intestines. Children with CDG have varying degrees of speech and language difficulty, poor balance, motor control, vision problems, hearing impairments and seizures.

CDGs are difficult to diagnose partly because there are only about 1,800 known cases worldwide. But through global networking and the unwavering determination of researchers and clinicians, new patients are being discovered every year, providing important information to parents to help them better understand what they are dealing with.

Hudson Freeze, PhD, director and professor of the Human Genetics Program at SBP, is a one of the scientific leaders helping diagnose new cases of CDG. Freeze and his colleague, Bobby Ng, recently led an international team charged with diagnosing three unrelated individuals thought to have a new type of CDG—but not confirmed. The work, published in the American Journal of Human Genetics, confirmed that the three had a specific kind of CDG never seen before, adding to the more than 125 existing types of CDGs.

“All CDG disorders are caused by mutations that impair glycosylation—the complex process by which cells build long sugar chains that are attached to proteins called glycoproteins,” explains Freeze. “These sugar chains are crucial for cellular growth, communication and essential cell functions.

“There are many genes involved in proper glycosylation,” says Freeze. “When two parents happen to carry a mutation on the same gene, they end up with a one-in-four chance of passing both mutated copies on their child, and that causes the disorder.”

Increasingly, babies and children with unexplained health problems such as developmental delays and organ dysfunction undergo whole-exome sequencing, a technique that sequences the part of the genome that encodes proteins.

“Exome sequencing is used to find mutations in genes, but sometimes we don’t know if the mutations found actually translate to a genetic condition like CDG,” says Ng.

“Our lab steps in when a suspected mutation is found in one of the many enzymes involved in glycosylation,” says Ng. “We perform biochemical tests to confirm that the mutation impairs the glycosylation process, helping families narrow in on a CDG diagnosis.”

“The three patients in the current study are the only confirmed cases of the FUT8-CDG type in the world,” says Freeze. “These very rare diagnoses are only made possible when physicians, researchers and parents reach out across continents to families who’ve had nothing but questions.”

For the past 8 years, SBP has organized an annual symposium in San Diego where scientists, doctors, and families gather to discuss the latest in science and medicine, and meet other families coping with rare diseases.

For more information on the 2018 SBP Rare Disease Day Symposium and CDG Family Conference, click here.

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A bunch of scientists walk into a brewery…

Authorkcusato
Date

April 7, 2016

A bunch of scientists walk into a brewery…

It sounds like the beginning of a joke, and there were plenty of smiles at the Karl Strauss Brewery in downtown San Diego on April 5th, but they were on the faces of the people there to see science and art come together, as part of a BioArt exhibit. Continue reading “A bunch of scientists walk into a brewery…”

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Study triples the number of known cases of a rare disease

Authorjmoore
Date

March 10, 2016

A recent paper from the laboratory of Hudson Freeze, PhD, characterizes 39 previously unreported cases of a specific type of congenital disorder of glycosylation (CDG). CDGs, the focus of research in Freeze’s lab in SBP’s Sanford Children’s Health Research Center, are rare inherited disorders. CDG symptoms, which can include developmental delay, movement problems, and impaired function of multiple organs, differ depending on the underlying mutation. Continue reading “Study triples the number of known cases of a rare disease”

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Rare Disease Day symposium brings together experts on disorders of glycosylation

Authorjmoore
Date

March 2, 2016

The Rare Disease Day symposium on February 26-27 featured many fascinating talks from experts on numerous aspects of congenital disorders of glycosylation (CDGs), from fundamental work on glycosylation pathways to animal models to diagnosis in the clinic. Following are summaries of each presentation:

Lawrence Tabak, D.D.S, PhD, deputy director of the NIH—After presenting his research on glycosylating enzymes in the 1980s, which helped lay the foundation for understanding the processes that are impaired in CDGs, Tabak discussed several initiatives by the NIH, including the Precision Medicine Initiative and efforts to increase reproducibility.

William Gahl, MD, PhD, director of the National Human Genome Research Institute (NHGRI)—Gahl highlighted several successes of the Undiagnosed Diseases Program. Most relevant to the field of CDGs was the discovery of the gene underlying a new type of CDG, in which an enzyme responsible for generating a necessary precursor for protein glycosylation (uridine diphosphate) is inactivated. This work also found that supplementation with uridine was an effective therapy.

Shengfang Jin, PhD, scientist at Agios Pharmaceuticals Inc.Jin presented her work on a mouse model of PMM2-CDG, which is caused by mutations in the gene for phosphomannomutase 2. Her research has identified a promising biomarker for PMM2-CDG, which is one of the more common types of CDG.

Richard Steet, PhD, associate professor at the University of Georgia—Steet’s lab is developing a new method of identifying which proteins are glycosylated by particular enzymes, which is important for understanding how each CDG-associated mutation leads to disease.

Reid Gilmore, PhD, professor at University of Massachusetts Medical School—Gilmore gave a detailed view of how two CDG-associated mutations, in isoforms of the same component (STT3A and STT3B) of a major glycosylating enzyme, oligosaccharyltransferase, impair protein glycosylation.

Robert Haltiwanger, PhD, professor at the University of Georgia—In another presentation on fundamental glycobiology, Haltiwanger described the function of two enzymes in the same pathway (fucosylation) inactivated in certain CDGs. Mutations in these enzymes underlie Peters plus syndrome and a single case of an unnamed severe CDG, respectively.

Marjan Huizing, PhD, staff scientist at the NHGRI—Using a mouse model of GNE myopathy, a progressive muscle disease caused by mutations in an enzyme required for protein sialylation, Huizing’s lab identified a therapy, supplementation with the sugar ManNAc, which is now in phase 2 trials, and identified a key biomarker. The mouse model also suggested that sialylation problems may be associated with certain kidney diseases, which is now under investigation.

Raymond Wang, MD, clinical geneticist at CHOC Children’s Clinic—Wang told the story of how he and scientific collaborators diagnosed an unusual case that initially appeared to be a CDG because of abnormal glycosylation. The disease-causing mutation was finally identified to be in mitochondrial translation, highlighting the similarities between CDGs and mitochondrial diseases.

David Beeson, PhD, professor at the University of Oxford—Beeson described a subset of congenital myasthenias caused by mutations in glycosylating enzymes, which have distinct symptoms from other myasthenias. These mutations likely cause this disorder by selectively impairing processing of the receptor by which muscle cells receive signals from nerves—the nicotinic acetylcholine receptor.

Lance Wells, PhD, professor at the University of Georgia— Wells summarized his work on the molecular basis of dystroglycanopathies, a subgroup of muscular dystrophies that arise from defects in O-mannosylation enzymes. Most recently, his lab resolved the puzzle of how mutations in an enzyme involved in a different form of glycosylation could cause this disease—they showed that the enzyme’s function had been incorrectly assigned.

Taroh Kinoshita, PhD, professor at Osaka University—Kinoshita is an expert on the addition of sugar-based anchors to lipids (GPI anchors), which link many proteins to the cell surface. He presented some of the extensive work from his team on how mutations in GPI-synthesizing enzymes cause disease, including identification of a therapy, vitamin B6, for seizures in GPI deficiencies.

Eva Morava, MD, PhD, professor at Tulane University Medical Center and the University of Leuven—Morava described preliminary results of a clinical trial of galactose supplementation to treat PGM1-CDG, in which patients are deficient in phosphoglucomutase-1 (this also impairs glucose metabolism). In these patients, galactose improves liver function and endocrine abnormalities and normalizes clotting factors.

Lynne Wolfe, MS, C.N.R.P. clinical research coordinator at the NHGRI—Wolfe discussed the CDG natural history study underway at the NIH—its goals and progress so far. The findings of this study will serve as a resource both for future diagnoses and for researchers in the field to correlate pathways with symptoms.

Tadashi Suzuki, D.Sci., team leader at the RIKEN Global Research Cluster—NGLY1 is different from other CDG-associated genes—it encodes a deglycosylating enzyme, which helps degrade glycosylated proteins that aren’t properly folded. Suzuki’s team has shown that inhibiting another deglycosylating enzyme, ENGase, prevents the formation of aggregates of misfolded proteins, suggesting that it could be a therapeutic target.

Hamed Jafar-Nejad, MD, associate professor at Baylor College of Medicine—Using fruit flies as a model, Jafar-Nejad’s lab is investigating how NGLY1 deficiency affects development. These flies replicate many of the features of human disease, including growth delay and impaired movement, so they could yield important insights into pathogenesis.

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New marker can help sick kids

Authorsgammon
Date

January 12, 2016

There are more than 7,000 rare diseases, but congenital disorders of glycosylation (CDGs) are among the cruelest. One particular condition, called ALG1, can have dire consequences. Affected children face intellectual disabilities, seizures, skeletal issues, facial deformities and many other problems.

“These are really sick kids,” says Hudson Freeze, PhD, professor and director of the Human Genetics Program at SBP. “Almost 45 percent die in the first several years, and many of these children will have severe developmental delays.”

Glycosylation is a critical biological process, in which sugar molecules are added to proteins to make them function properly. A protein that’s improperly glycosylated is like a car without a steering wheel – it simply can’t perform its job.

To make matters worse, correctly diagnosing ALG1 and other CDGs can be a long, stressful and expensive process. Sometimes families must wait months or years to find out what’s causing their child’s condition. And while genomic sequencing is beginning to make a difference, more must be done to diagnose sick kids and help parents make informed decisions.

One potential solution is disease markers – biochemical signatures that identify particular conditions. Armed with this information, clinicians could accelerate the diagnostic process with a simple blood test.

A Unique Sugar Molecule

Researchers may have found a marker for ALG1 and possibly other CDGs. In a paper published in the journal Clinical Chemistry, the team describes a unique sugar molecule that is particularly common in children with ALG1.

The sugar, a type of N-tetrasaccharide, was discovered by Miao He, PhD, who co-directs the Metabolic Disease Laboratory at The Children’s Hospital of Philadelphia. However, he had only a few patients and she was unclear on the molecule’s origin. Working closely with Freeze’s lab, she started hunting for the aberrant sugar in Freeze’s large collection of proven ALG1 patients.

“We looked at a number of kids with ALG1 and kept finding this abnormal sugar,” says Freeze. “It’s a sugar chain that doesn’t normally exist in nature. You can perform a very simple test, that costs just a few hundred dollars, and if you see this abnormality, you could get genetic confirmation and turn it around quickly.”

The beauty of this marker is that it narrows the field for genomic analysis. Rather than looking at a patient’s entire genome – billions of base pairs and more than 20,000 genes – clinicians can focus on the gene that may be causing the disorder, dramatically accelerating the diagnostic process.

Quickly diagnosing a rare disorder can help get kids into treatment, if treatments are available. But it can also help parents navigate the family planning process and inform prenatal testing. In the big picture, disease markers could be a critical adjunct for genomic testing.

“Genome and exome sequencing is the future, but it will require some biochemical confirmation to support the genomic test,” notes Freeze. “This marker can really help us shortcut the long diagnostic odyssey many parents must go through.”

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Explaining your science

Authorsbraun
Date

August 28, 2015

 

“As scientists, it’s our job to communicate to the public the importance and benefits of biomedical research in plain language. The Alan Alda Center is nationally known for helping us do that. Their programs work, if we work with them.  Let’s get started.” — Hudson Freeze, PhD, director of the Human Genetics Program, Sanford Burnham Prebys Medical Discovery Institute (La Jolla, California).

Register for the workshop at sbpdiscovery.org/alda

 

Continue reading “Explaining your science”

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Run Noah run

Authorsgammon
Date

July 1, 2015

On Saturday, July 4, at 3 p.m., an extraordinary man named Noah Coughlan will complete a run—a solo run— that stretched more than 3,000 miles and 13 states. His journey will have lasted 127 days. Even more impressive is that this is the third time he has done it. Why on earth would someone take on such a feat? Continue reading “Run Noah run”

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You’re invited to Rare Disease Day at Sanford-Burnham in La Jolla

Authorsgammon
Date

February 9, 2015

Did you know that in the United States there are more people with a rare disease than people with cancer and AIDS combined?

Rare Disease Day is an internationally recognized day to raise awareness about rare diseases and their impact on patients’ lives. There are more than 6,000 types of rare diseases, and most of them are genetic disorders that affect children. The term “rare disease” is a designation of disorders that affect fewer than 200,000 individuals. For most rare-disease patients, the rarity of their disorder makes the process of an accurate diagnosis a significant challenge—requiring extensive genetic and biochemical tests. Equally, if not more, challenging is the search for effective treatments to improve the health and lives of those that suffer. Continue reading “You’re invited to Rare Disease Day at Sanford-Burnham in La Jolla”

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Better science through better communication

AuthorGuest Blogger
Date

January 28, 2015

This post was written by Diane Wilson, a freelance writer.

In a growing trend, scientists across the nation are recognizing the need to become better communicators—better advocates, if you will—of the important research they perform. Having the skills to clearly explain what they do and why they do it to a lay audience not only increases the public’s understanding of science, it also helps people make knowledgeable decisions on government and public policy. And that can lead to increased funding.

Continue reading “Better science through better communication”